PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g024740.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 183aa    MW: 20877.2 Da    PI: 9.3358
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g024740.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000354062123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      +kC++C+k+F +   L  H+ +H
  Sopen03g024740.1 40 FKCKKCKKRFESFQALGGHMTSH 62
                      89******************998 PP

2zf-C2H213.30.0002586108123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cgk F     L  H+r+H
  Sopen03g024740.1  86 HECSICGKNFAIGQALGGHMRKH 108
                       78*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.99E-839108No hitNo description
PfamPF139129.1E-114063IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8064067IPR007087Zinc finger, C2H2
SMARTSM003550.0174062IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-479111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.7E-1086111IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.88786113IPR007087Zinc finger, C2H2
SMARTSM003550.2286108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MDMTLKRSKV EEESVEKFAM ANCADIMKRN ELLERPNLIF KCKKCKKRFE SFQALGGHMT  60
SHKNKLNKLT TMSTAGELLH VNLQKHECSI CGKNFAIGQA LGGHMRKHRD ELNQLEHKKK  120
KMKLDESLIK SGRELAEALN SKSDELAEAR HDKLDLEGSK RTLFLGLNLD LNLTIDENEL  180
RTG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068881.11e-129PREDICTED: zinc finger protein ZAT11-like
TrEMBLK4BIR31e-103K4BIR3_SOLLC; Uncharacterized protein
STRINGSolyc03g093870.1.11e-102(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.14e-21C2H2 family protein